PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490603.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 671aa    MW: 73640.2 Da    PI: 5.8396
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490603.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06262282526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd C +aHg
  XP_004490603.1 262 PCPEFRK-GSCSKGDLCEYAHG 282
                     8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.4E-1541161IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.83E-1453171IPR020683Ankyrin repeat-containing domain
SMARTSM00248106292IPR002110Ankyrin repeat
PROSITE profilePS5029716.22862142IPR020683Ankyrin repeat-containing domain
PfamPF136371.8E-763121No hitNo description
CDDcd002043.26E-1164140No hitNo description
SMARTSM002480.007197129IPR002110Ankyrin repeat
PROSITE profilePS5008811.56897132IPR002110Ankyrin repeat
PROSITE profilePS5010312.887257284IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4257283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4290320IPR000571Zinc finger, CCCH-type
SMARTSM003568.7292315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MGYEIVNNEG LGQHHEVSSL LEFSAADDLI SFRDAVEKEG CDVDGVGLWY GRRVGSNKLG  60
YEERTPLMVA AIFGSLGVSA YILATGYVDV NRSSGSDGAT ALHCAVAGGS AASVEIIKLL  120
LDASADASAV DVNGNRPVDL IVSVANSIFN PRKRMLQALL EGIGGADWTC LTFPEEISFG  180
HVDEQQRQDV NMPRVSKDYP VDLSLPDINN GIFSTDEFRM YTFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPKMYNYTC VPCPEFRKGS CSKGDLCEYA HGIFECWLHP AQYRTRLCKD  300
ESSCTRRVCF FAHKLEELRP LYASTGSAIP SPRSYSGSAS ALEMGSLSPI ALGSPSVMIP  360
PSSTTPLTPS GASSAVAAAS MWQTQSNVSV PTLQLPKSRF NTAITAGDFD SSMAMLQVET  420
QRRRQQQLKM DEISGLSSPS NWKNSMPNSP SFQVSLSDHT EDIFGSHDPS ILHNKFHGIS  480
LDAAGLPQLQ SPTGIQMHPS MNQQQQNYSS CHSPTYRFDR SGEAAAAALN ARAAAFSKRS  540
QSFIERSVAN RYSELLSPPN PYAFSNWGSP DGKLNWAIHG EELNKLRKSS SFGFRSSSTP  600
LTTAATQAPE NDDEPDVSWV NSLVKDVTPQ ESGQYKAEYQ QRKLQYNLNN GTNAIPAWLE  660
QMYMEQEQMV H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490603.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
TrEMBLG7JZH70.0G7JZH7_MEDTR; ARM repeat CCCH-type zinc finger protein
STRINGGLYMA14G37330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-169C3H family protein